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    UV radiation resistance-associated protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817836, updated on 18-Sep-2024

    Summary

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    Official Full Name
    UV radiation resistance-associated protein
    Primary source
    TAIR:AT2G32760
    Locus tag
    AT2G32760
    See related
    Araport:AT2G32760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24L7.10; F24L7_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (13891537..13894767)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene galactosyltransferase 13 Neighboring gene Exostosin family protein Neighboring gene small ubiquitinrelated modifier 5 Neighboring gene purple acid phosphatase 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Vacuolar Trafficking Protein VPS38 Is Dispensable for Autophagy. Lee HN, et al. Plant Physiol, 2018 Feb. PMID 29184027, Free PMC Article
    2. The Arabidopsis USL1 controls multiple aspects of development by affecting late endosome morphology. Yuan R, et al. New Phytol, 2018 Sep. PMID 29897620, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036390.2
    NM_179866.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol 3-kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables phosphatidylinositol 3-kinase catalytic subunit binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables retromer complex binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within multivesicular body sorting pathway IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within_positive_effect protein storage vacuole organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein targeting to vacuole IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of auxin polar transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with late endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in multivesicular body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of phosphatidylinositol 3-kinase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UV radiation resistance-associated protein
    NP_001031467.1
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850197.1
    • unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13891537..13894767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336413.1 → NP_001323615.1  UV radiation resistance-associated protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IUP6

    2. NM_001036390.2 → NP_001031467.1  UV radiation resistance-associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031467.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IUP6

    3. NM_179866.2 → NP_850197.1  UV radiation resistance-associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850197.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48841, Q8S9J3
      UniProtKB/TrEMBL
      A0A178VMR3, A0A178VPN4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S9J3.1

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