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    Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819015, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT2G44090
    Locus tag
    AT2G44090
    See related
    Araport:AT2G44090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6E13.22
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (18238269..18241410, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L2 family Neighboring gene NagB/RpiA/CoA transferase-like superfamily protein Neighboring gene ARGOS-like protein Neighboring gene ncRNA Neighboring gene guanosine nucleotide diphosphate dissociation inhibitor 1 Neighboring gene Seven transmembrane MLO family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036460.2
    NM_001337072.1
    NM_001337074.1
    NM_129972.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ankyrin repeat family protein
    NP_001031537.1
    • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G59910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566008.1
    • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G59910.1); Has 93 Blast hits to 93 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 66; Viruses - 3; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18238269..18241410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337073.1 → NP_001324773.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B199
      Conserved Domains (2) summary
      sd00045
      Location:158 → 184
      ANK; ANK repeat [structural motif]
      cl39094
      Location:162 → 239
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_129972.4 → NP_566008.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566008.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYZ3, A0A384KCN1, O80579, Q94AD7
      Conserved Domains (3) summary
      sd00045
      Location:294 → 320
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:298 → 375
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:355 → 437
      Ank_2; Ankyrin repeats (3 copies)

    3. NM_001337072.1 → NP_001324775.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B199
      Conserved Domains (2) summary
      sd00045
      Location:158 → 184
      ANK; ANK repeat [structural motif]
      cl39094
      Location:162 → 239
      Ank_2; Ankyrin repeats (3 copies)

    4. NM_001036460.2 → NP_001031537.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031537.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYZ3, A0A384KCN1, O80579, Q94AD7
      Conserved Domains (3) summary
      sd00045
      Location:294 → 320
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:298 → 375
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:355 → 437
      Ank_2; Ankyrin repeats (3 copies)

    5. NM_001337074.1 → NP_001324774.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYZ3, A0A384KCN1, O80579, Q94AD7
      Conserved Domains (3) summary
      sd00045
      Location:294 → 320
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:298 → 375
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:355 → 437
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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