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    DEA(D/H)-box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819189, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEA(D/H)-box RNA helicase family protein
    Primary source
    TAIR:AT2G45810
    Locus tag
    AT2G45810
    See related
    Araport:AT2G45810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4I18.21
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (18859472..18862970)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phosphomannomutase Neighboring gene ncRNA Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene Remorin family protein Neighboring gene downstream target of AGL15 2 Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene AT hook motif DNA-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs. Chantarachot T, et al. Nat Plants, 2020 Jun. PMID 32483330
    2. A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern. Schiaffini M, et al. Plant Physiol, 2022 Feb 4. PMID 34791434, Free PMC Article
    3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
      Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130144.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding HDA PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DEA(D/H)-box RNA helicase family protein
    NP_182105.1
    • DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G61240.2); Has 68232 Blast hits to 53527 proteins in 3291 species: Archae - 672; Bacteria - 23017; Metazoa - 14526; Fungi - 7874; Plants - 4320; Viruses - 271; Other Eukaryotes - 17552 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18859472..18862970
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130144.4 → NP_182105.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182105.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80838, Q94BV4, Q9SB95
      UniProtKB/TrEMBL
      A0A178VX07, A0A5S9X7B5, A0A654F2A0
      Conserved Domains (2) summary
      cd18787
      Location:366 → 495
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17940
      Location:156 → 356
      DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94BV4.2

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