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    SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818127, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB/MDM2 domain superfamily protein
    Primary source
    TAIR:AT2G35605
    Locus tag
    AT2G35605
    See related
    Araport:AT2G35605
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (14946041..14947276)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene BREVIS RADIX-like 1 Neighboring gene xyloglucanase 113 Neighboring gene copper amine oxidase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129114.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWIB/MDM2 domain superfamily protein
    NP_565810.1
    • SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT1G31760.1); Has 1125 Blast hits to 1022 proteins in 233 species: Archae - 0; Bacteria - 211; Metazoa - 71; Fungi - 192; Plants - 413; Viruses - 10; Other Eukaryotes - 228 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14946041..14947276
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129114.4 → NP_565810.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565810.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYP2, Q93W30
      Conserved Domains (1) summary
      pfam02201
      Location:32 → 105
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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