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    RPH1 resistance to phytophthora 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819419, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPH1
    Official Full Name
    resistance to phytophthora 1
    Primary source
    TAIR:AT2G48070
    Locus tag
    AT2G48070
    See related
    Araport:AT2G48070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RESISTANCE TO PHYTOPHTHORA 1; T9J23.22
    Summary
    Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
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    Genomic context

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    See RPH1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (19662715..19664465)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene DNAse I-like superfamily protein Neighboring gene piezo-type mechanosensitive ion channel component Neighboring gene uncharacterized protein Neighboring gene oxidoreductase, 2OG-Fe(II) oxygenase family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The chloroplast protein RPH1 plays a role in the immune response of Arabidopsis to Phytophthora brassicae. Belhaj K, et al. Plant J, 2009 Apr. PMID 19170932
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RPH1 encodes a chloroplast protein, indicating an essential role of the chloroplast in activation of immune responses to Phytophthora. [AtRPH1]
      Title: The chloroplast protein RPH1 plays a role in the immune response of Arabidopsis to Phytophthora brassicae.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202847.1
    NM_130374.4
    NM_180153.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to oomycetes IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in hydrogen peroxide biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of defense response to oomycetes IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of hydrogen peroxide biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    resistance to phytophthora 1
    NP_001189776.1
    • RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
    NP_566122.1
    • RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    NP_850484.1
    • RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19662715..19664465
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130374.4 → NP_566122.1  resistance to phytophthora 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566122.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AU8, Q9ZU82
      UniProtKB/TrEMBL
      A0A178VW69, A0A5S9X7Z5

    2. NM_001202847.1 → NP_001189776.1  resistance to phytophthora 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189776.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IN59

    3. NM_180153.2 → NP_850484.1  resistance to phytophthora 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850484.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AU8, Q9ZU82
      UniProtKB/TrEMBL
      A0A178VW69, A0A5S9X7Z5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZU82.2

    Gene LinkOut

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