U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EPR1 extensin proline-rich 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817282, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EPR1
    Official Full Name
    extensin proline-rich 1
    Primary source
    TAIR:AT2G27380
    Locus tag
    AT2G27380
    See related
    Araport:AT2G27380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEPR1; extensin proline-rich 1; F12K2.4; F12K2_4
    Summary
    Encodes an extensin like gene involved in seed germination.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EPR1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (11713411..11715774)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene pseudo Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis AtEPR1 extensin-like gene is specifically expressed in endosperm during seed germination. Dubreucq B, et al. Plant J, 2000 Sep. PMID 10972890
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_128298.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of cell wall TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall modification TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within seed germination TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    extensin proline-rich 1
    NP_180307.1
    • extensin proline-rich 1 (EPR1); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall modification, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: micropylar endosperm; BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22142.1); Has 687861 Blast hits to 76128 proteins in 2770 species: Archae - 2570; Bacteria - 168893; Metazoa - 232232; Fungi - 83762; Plants - 88472; Viruses - 18896; Other Eukaryotes - 93036 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11713411..11715774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128298.2 → NP_180307.1  extensin proline-rich 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180307.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZQI0
      UniProtKB/TrEMBL
      A0A654EWN5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZQI0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.