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    SYP124 syntaxin of plants 124 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842423, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP124
    Official Full Name
    syntaxin of plants 124
    Primary source
    TAIR:AT1G61290
    Locus tag
    AT1G61290
    See related
    Araport:AT1G61290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP124; syntaxin of plants 124; T1F9.22; T1F9_22
    Summary
    member of SYP12 Gene Family
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    Genomic context

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    See SYP124 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (22604777..22606385)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LRR and NB-ARC domains-containing disease resistance protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Asymmetric localization of Arabidopsis SYP124 syntaxin at the pollen tube apical and sub-apical zones is involved in tip growth. Silva PA, et al. BMC Plant Biol, 2010 Aug 18. PMID 20718953, Free PMC Article
    2. Evolutionarily diverse SYP1 Qa-SNAREs jointly sustain pollen tube growth in Arabidopsis. Slane D, et al. Plant J, 2017 Nov. PMID 28792633
    3. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333948.1
    NM_104810.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNAP receptor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within membrane fusion TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in transport vesicle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 124
    NP_001319282.1
    • syntaxin of plants 124 (SYP124); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 125 (TAIR:AT1G11250.1); Has 2975 Blast hits to 2948 proteins in 317 species: Archae - 21; Bacteria - 77; Metazoa - 1321; Fungi - 552; Plants - 504; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22604777..22606385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333948.1 → NP_001319282.1  syntaxin of plants 124 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64791, Q1PFI1
      UniProtKB/TrEMBL
      A0MED7

    2. NM_104810.3 → NP_176324.1  syntaxin of plants 124 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176324.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64791, Q1PFI1
      UniProtKB/TrEMBL
      A0MED7
      Conserved Domains (4) summary
      cd00179
      Location:33 → 190
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
      cd15848
      Location:202 → 263
      SNARE_syntaxin1-like; SNARE motif of syntaxin 1 and related proteins
      pfam00804
      Location:33 → 238
      Syntaxin; Syntaxin
      pfam05739
      Location:239 → 290
      SNARE; SNARE domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64791.1

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