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    Polynucleotide adenylyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838872, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Polynucleotide adenylyltransferase family protein
    Primary source
    TAIR:AT1G22660
    Locus tag
    AT1G22660
    See related
    Araport:AT1G22660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22J18.17; T22J18_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (8017281..8021930)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb domain protein 3 Neighboring gene Plant neutral invertase family protein Neighboring gene Protease-associated (PA) RING/U-box zinc finger family protein Neighboring gene uncharacterized protein Neighboring gene Gibberellin-regulated family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual targeting of the tRNA nucleotidyltransferase in plants: not just the signal. von Braun SS, et al. J Exp Bot, 2007. PMID 18182422
    2. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332559.1
    NM_102113.4
    NM_202158.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    Polynucleotide adenylyltransferase family protein
    NP_173680.1
    • Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 8643 Blast hits to 8635 proteins in 2546 species: Archae - 2; Bacteria - 6091; Metazoa - 128; Fungi - 234; Plants - 120; Viruses - 8; Other Eukaryotes - 2060 (source: NCBI BLink).
    NP_973887.1
    • Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8017281..8021930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332557.1 → NP_001322489.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAA8, A0A1P8AU79

    2. NM_001332558.1 → NP_001322488.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU61, A0A5S9VLU1

    3. NM_102113.4 → NP_173680.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173680.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WC03, Q94K06
      Conserved Domains (3) summary
      COG0617
      Location:92 → 334
      PcnB; tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
      pfam01743
      Location:110 → 247
      PolyA_pol; Poly A polymerase head domain
      pfam12627
      Location:275 → 334
      PolyA_pol_RNAbd; Probable RNA and SrmB- binding site of polymerase A

    4. NM_202158.1 → NP_973887.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973887.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WC03, F4I2Y2
      Conserved Domains (3) summary
      COG0617
      Location:92 → 334
      PcnB; tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
      pfam01743
      Location:110 → 247
      PolyA_pol; Poly A polymerase head domain
      pfam12627
      Location:275 → 334
      PolyA_pol_RNAbd; Probable RNA and SrmB- binding site of polymerase A

    5. NM_001332559.1 → NP_001322490.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAA8, A0A1P8AU92
    Nucleotide Protein
    Heading Accession and Version

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