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    TPX2 (targeting protein for Xklp2) protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818161, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TPX2 (targeting protein for Xklp2) protein family
    Primary source
    TAIR:AT2G35880
    Locus tag
    AT2G35880
    See related
    Araport:AT2G35880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F19.21; F11F19_21
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (15062856..15066056, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Sucrose-6F-phosphate phosphohydrolase family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene FASCICLIN-like arabinogalactan protein 16 precursor Neighboring gene ncRNA Neighboring gene calcium-dependent protein kinase 25 Neighboring gene Mal d 1-associated protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The microtubule-associated protein WDL4 modulates auxin distribution to promote apical hook opening in Arabidopsis. Deng J, et al. Plant Cell, 2021 Jul 19. PMID 33730147, Free PMC Article
    2. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The microtubule-associated protein WDL4 modulates auxin distribution to promote apical hook opening in Arabidopsis.
      Title: The microtubule-associated protein WDL4 modulates auxin distribution to promote apical hook opening in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336577.1
    NM_129147.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein localization to membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TPX2 (targeting protein for Xklp2) protein family
    NP_565829.1
    • TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT4G32330.3); Has 16554 Blast hits to 10282 proteins in 807 species: Archae - 18; Bacteria - 1410; Metazoa - 6904; Fungi - 1967; Plants - 895; Viruses - 63; Other Eukaryotes - 5297 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15062856..15066056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336576.1 → NP_001325400.1  TPX2 (targeting protein for Xklp2) protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZD3, Q9SJ62
      UniProtKB/TrEMBL
      A0A178VTR1, A0A654F0L2

    2. NM_129147.4 → NP_565829.1  TPX2 (targeting protein for Xklp2) protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565829.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZD3, Q9SJ62
      UniProtKB/TrEMBL
      A0A178VTR1, A0A654F0L2
      Conserved Domains (1) summary
      pfam06886
      Location:251 → 304
      TPX2; Targeting protein for Xklp2 (TPX2)

    3. NM_001336577.1 → NP_001325399.1  TPX2 (targeting protein for Xklp2) protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZD3, Q9SJ62
      UniProtKB/TrEMBL
      A0A178VTR1, A0A654F0L2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJ62.2

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