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    hypothetical protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837057, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF295)
    Primary source
    TAIR:AT1G05550
    Locus tag
    AT1G05550
    See related
    Araport:AT1G05550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25N20.20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (1640959..1643917, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UDP-glucosyl transferase 75B2 Neighboring gene hypothetical protein (DUF295) Neighboring gene ncRNA Neighboring gene UDP-glucosyltransferase 75B1 Neighboring gene callose synthase 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160834.1
    NM_001331553.1
    NM_100434.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF295)
    NP_001154306.1
    • Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1); Has 175 Blast hits to 175 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001184912.1
    • Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1).
    NP_172046.4
    • Protein of unknown function (DUF295); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1); Has 175 Blast hits to 175 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1640959..1643917 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197983.1 → NP_001184912.1  hypothetical protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184912.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9SSZ4, F4I8S9
      Conserved Domains (1) summary
      pfam03478
      Location:313 → 356
      DUF295; Protein of unknown function (DUF295)

    2. NM_100434.5 → NP_172046.4  hypothetical protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172046.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I8T0

    3. NM_001160834.1 → NP_001154306.1  hypothetical protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154306.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I8T1

    4. NM_001331553.1 → NP_001322399.1  hypothetical protein (DUF295) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I8T0
    Nucleotide Protein
    Heading Accession and Version

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