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    TAF6B TBP-ASSOCIATED FACTOR 6B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841877, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TAF6B
    Official Full Name
    TBP-ASSOCIATED FACTOR 6B
    Primary source
    TAIR:AT1G54360
    Locus tag
    AT1G54360
    See related
    Araport:AT1G54360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D21.18; F20D21_18; TAF6B1; TAF6B2; TAF6B3; TAF6B4; TBP-ASSOCIATED FACTOR 6B; TBP-ASSOCIATED FACTOR 6B1; TBP-ASSOCIATED FACTOR 6B2; TBP-ASSOCIATED FACTOR 6B3; TBP-associated factor 6B4
    Summary
    Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.
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    Genomic context

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    See TAF6B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (20290556..20293324)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene isocitrate dehydrogenase Neighboring gene ABC transporter family protein Neighboring gene ncRNA Neighboring gene sodium hydrogen exchanger 5 Neighboring gene ncRNA Neighboring gene spliceosome protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis TFIID factor AtTAF6 controls pollen tube growth. Lago C, et al. Dev Biol, 2005 Sep 1. PMID 16039640
    2. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036110.1
    NM_001198292.1
    NM_001333642.1
    NM_001333643.1
    NM_104314.6
    NM_202295.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of SLIK (SAGA-like) complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TBP-ASSOCIATED FACTOR 6B
    NP_001031187.2
    • TBP-ASSOCIATED FACTOR 6B (TAF6B); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: regulation of transcription factor activity, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TATA BOX ASSOCIATED FACTOR II 59 (TAIR:AT1G04950.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001185221.1
    • TBP-ASSOCIATED FACTOR 6B (TAF6B); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: regulation of transcription factor activity, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TATA BOX ASSOCIATED FACTOR II 59 (TAIR:AT1G04950.3).
    NP_001319224.1
    • TBP-ASSOCIATED FACTOR 6B (TAF6B); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: regulation of transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442); BEST Arabidopsis thaliana protein match is: TATA BOX ASSOCIATED FACTOR II 59 (TAIR:AT1G04950.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_175838.4
    • TBP-ASSOCIATED FACTOR 6B (TAF6B); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of transcription factor activity, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TATA BOX ASSOCIATED FACTOR II 59 (TAIR:AT1G04950.3); Has 448 Blast hits to 448 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 137; Plants - 65; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    NP_974024.2
    • TBP-ASSOCIATED FACTOR 6B (TAF6B); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: regulation of transcription factor activity, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TATA BOX ASSOCIATED FACTOR II 59 (TAIR:AT1G04950.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20290556..20293324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104314.6 → NP_175838.4  TBP-ASSOCIATED FACTOR 6B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Z6, A0A2H1ZEC8, A0A5S9WPW9

    2. NM_001333643.1 → NP_001322136.1  TBP-ASSOCIATED FACTOR 6B, partial [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Z6, A0A1P8AT29, A0A5S9WPW9

    3. NM_202295.2 → NP_974024.2  TBP-ASSOCIATED FACTOR 6B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974024.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HVA6, F4HVA7, F4HVA8, F4HVA9, F4HVB0, Q6S7A0, Q6S7A1, Q6S7A2, Q8W4N6, Q9SLJ8
      UniProtKB/TrEMBL
      A0A178W6Z6, A0A5S9WPW9
      Conserved Domains (1) summary
      cd08050
      Location:3 → 350
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    4. NM_001036110.1 → NP_001031187.2  TBP-ASSOCIATED FACTOR 6B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031187.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Z6, A0A5S9WPW9
      Conserved Domains (1) summary
      cd08050
      Location:3 → 320
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    5. NM_001198292.1 → NP_001185221.1  TBP-ASSOCIATED FACTOR 6B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185221.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Z6, A0A5S9WPW9
      Conserved Domains (1) summary
      cd08050
      Location:3 → 299
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    6. NM_001333642.1 → NP_001319224.1  TBP-ASSOCIATED FACTOR 6B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Z6, A0A2H1ZEC9, A0A5S9WPW9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HVA6.1

    Gene LinkOut

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