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    MAC/Perforin domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838043, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MAC/Perforin domain-containing protein
    Primary source
    TAIR:AT1G14780
    Locus tag
    AT1G14780
    See related
    Araport:AT1G14780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10B6.18; F10B6_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5090809..5094152)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family Neighboring gene KNOX meinox protein Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene RNA-dependent RNA polymerase 1 Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene semialdehyde dehydrogenase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101347.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of salicylic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    MAC/Perforin domain-containing protein
    NP_172931.1
    • MAC/Perforin domain-containing protein; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 221 Blast hits to 220 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5090809..5094152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101347.4 → NP_172931.1  MAC/Perforin domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172931.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L612, Q9LQV3
      UniProtKB/TrEMBL
      A0A178WCH8, A0A5S9UFL8, A0A7G2DT81
      Conserved Domains (1) summary
      pfam01823
      Location:107 → 325
      MACPF; MAC/Perforin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L612.1

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