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    MuDR family transposase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842731, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MuDR family transposase
    Primary source
    TAIR:AT1G64260
    Locus tag
    AT1G64260
    See related
    Araport:AT1G64260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22C12.28; F22C12_28
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (23847405..23850142)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DEK carboxy-terminal domain protein Neighboring gene ncRNA Neighboring gene MuDR family transposase Neighboring gene pseudo Neighboring gene regulatory protein (NPR1) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    MuDR family transposase
    NP_001319317.1
    • MuDR family transposase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: MuDR family transposase (TAIR:AT1G64255.1); Has 1329 Blast hits to 1275 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1325; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23847405..23850142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334154.1 → NP_001319317.1  MuDR family transposase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EL93, Q9C7V1

    2. NM_105100.3 → NP_176608.2  MuDR family transposase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176608.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EL93, Q9C7V1
      Conserved Domains (3) summary
      smart00575
      Location:642 → 668
      ZnF_PMZ; plant mutator transposase zinc finger
      pfam03108
      Location:185 → 239
      DBD_Tnp_Mut; MuDR family transposase
      pfam10551
      Location:383 → 474
      MULE; MULE transposase domain
    Nucleotide Protein
    Heading Accession and Version

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