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    ATP-dependent zinc metalloprotease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842071, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent zinc metalloprotease
    Primary source
    TAIR:AT1G56180
    Locus tag
    AT1G56180
    See related
    Araport:AT1G56180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14G9.20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (21024486..21028066, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene ncRNA Neighboring gene myb domain protein 72 Neighboring gene nuclear factor Y, subunit C2 Neighboring gene Phosphoglycerate kinase family protein Neighboring gene embryo defective 1303

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Putative Chloroplast Thylakoid Metalloprotease VIRESCENT3 Regulates Chloroplast Development in Arabidopsis thaliana. Qi Y, et al. J Biol Chem, 2016 Feb 12. PMID 26702056, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001333768.1
    NM_104497.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent zinc metalloprotease
    NP_564711.1
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in 83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21024486..21028066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104497.3 → NP_564711.1  ATP-dependent zinc metalloprotease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564711.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBB4, Q9ASV7, Q9C7J3
      Conserved Domains (1) summary
      pfam01434
      Location:229 → 319
      Peptidase_M41; Peptidase family M41

    2. NM_001333768.1 → NP_001320440.1  ATP-dependent zinc metalloprotease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMW9
    Nucleotide Protein
    Heading Accession and Version

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