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    PETE1 plastocyanin 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843942, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PETE1
    Official Full Name
    plastocyanin 1
    Primary source
    TAIR:AT1G76100
    Locus tag
    AT1G76100
    See related
    Araport:AT1G76100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    plastocyanin 1; T23E18.3; T23E18_3
    Summary
    One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions. Mutation of this gene does not have obvious effect on photosynthesis.
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    Genomic context

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    See PETE1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (28553883..28554930, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene chloroplastic drought-induced stress protein of 32 kD Neighboring gene sterol methyltransferase 3 Neighboring gene HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein Neighboring gene Pseudouridine synthase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Contribution of plastocyanin isoforms to photosynthesis and copper homeostasis in Arabidopsis thaliana grown at different copper regimes. Abdel-Ghany SE. Planta, 2009 Mar. PMID 19084994
    2. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
    3. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article
    4. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results show that the pete2 mutant accumulated more Cu/Zn superoxide dismutase (CSD2 and CSD1) and Cu chaperone (CCS) whereas the pete1 mutant accumulated less.
      Title: Contribution of plastocyanin isoforms to photosynthesis and copper homeostasis in Arabidopsis thaliana grown at different copper regimes.
    Submit: New GeneRIF Correction

    General gene information

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    NM_106259.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    NOT involved_in response to copper ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid lumen HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid lumen HDA PubMed 

    General protein information

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    Preferred Names
    plastocyanin 1
    NP_177737.1
    • plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28553883..28554930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334709.1 → NP_001321069.1  plastocyanin 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APR2, A0A5S9WUR5, A0A654EPE3

    2. NM_106259.4 → NP_177737.1  plastocyanin 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177737.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P11490, P93656, Q52K91, Q9SGS3
      UniProtKB/TrEMBL
      A0A5S9WUR5, A0A654EPE3
      Conserved Domains (2) summary
      COG3794
      Location:55 → 171
      PetE; Plastocyanin [Energy production and conversion]
      cd04219
      Location:74 → 171
      Plastocyanin; Plastocyanin is a type I copper protein and functions in the electron transfer from PSII to PSI
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P11490.2

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