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    Eukaryotic aspartyl protease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839375, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Eukaryotic aspartyl protease family protein
    Primary source
    TAIR:AT1G01300
    Locus tag
    AT1G01300
    See related
    Araport:AT1G01300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6F3.10; F6F3_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (116784..118845)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 703, subfamily A, polypeptide 2 Neighboring gene cofactor of nitrate reductase and xanthine dehydrogenase 3 Neighboring gene uncharacterized protein Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    2. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100012.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    Eukaryotic aspartyl protease family protein
    NP_171637.1
    • Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, response to karrikin; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G61820.1); Has 3898 Blast hits to 3871 proteins in 332 species: Archae - 0; Bacteria - 0; Metazoa - 1165; Fungi - 579; Plants - 1953; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      116784..118845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100012.3 → NP_171637.1  Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171637.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9B9, Q9LNJ3
      UniProtKB/TrEMBL
      A0A654E7Y2
      Conserved Domains (2) summary
      cd05472
      Location:141 → 484
      cnd41_like; Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase
      PLN03146
      Location:73 → 485
      PLN03146; aspartyl protease family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LNJ3.1

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