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    Chitinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818960, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Chitinase family protein
    Primary source
    TAIR:AT2G43580
    Locus tag
    AT2G43580
    See related
    Araport:AT2G43580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O19.31
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (18078649..18080094, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene chitinase Neighboring gene Chitinase family protein Neighboring gene Chitinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Zheng Z, et al. Plant J, 2006 Nov. PMID 17059405
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_129920.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Chitinase family protein
    NP_181886.1
    • Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2596 Blast hits to 2382 proteins in 484 species: Archae - 0; Bacteria - 530; Metazoa - 33; Fungi - 193; Plants - 1749; Viruses - 5; Other Eukaryotes - 86 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18078649..18080094 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129920.3 → NP_181886.1  Chitinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181886.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O24598
      UniProtKB/TrEMBL
      A0A178VTN4, A0A7G2EH55
      Conserved Domains (2) summary
      cd00325
      Location:73 → 265
      chitinase_GH19; Glycoside hydrolase family 19, chitinase domain
      pfam00187
      Location:29 → 54
      Chitin_bind_1; Chitin recognition protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O24598.1

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