U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NUP50 (Nucleoporin 50 kDa) protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841668, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    NUP50 (Nucleoporin 50 kDa) protein
    Primary source
    TAIR:AT1G52380
    Locus tag
    AT1G52380
    See related
    Araport:AT1G52380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K6.4; F19K6_4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (19508938..19511641)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Coatomer, beta' subunit Neighboring gene Ribosomal protein L22p/L17e family protein Neighboring gene uncharacterized protein Neighboring gene beta glucosidase 18

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds. Oishi A, et al. J Exp Bot, 2024 Jan 1. PMID 37849222
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds.
      Title: Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001333543.1
    NM_104116.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    NUP50 (Nucleoporin 50 kDa) protein
    NP_564606.1
    • NUP50 (Nucleoporin 50 kDa) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993), Nuclear pore complex, NUP2/50/61 (InterPro:IPR015007); BEST Arabidopsis thaliana protein match is: NUP50 (Nucleoporin 50 kDa) protein (TAIR:AT3G15970.1); Has 1614 Blast hits to 1303 proteins in 238 species: Archae - 0; Bacteria - 48; Metazoa - 835; Fungi - 410; Plants - 179; Viruses - 3; Other Eukaryotes - 139 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19508938..19511641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333541.1 → NP_001322287.1  NUP50 (Nucleoporin 50 kDa) protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L6Y2, Q9C829
      UniProtKB/TrEMBL
      A0A178WDE1

    2. NM_001333542.1 → NP_001322288.1  NUP50 (Nucleoporin 50 kDa) protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L6Y2, Q9C829
      UniProtKB/TrEMBL
      A0A178WDE1

    3. NM_104116.4 → NP_564606.1  NUP50 (Nucleoporin 50 kDa) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564606.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L6Y2, Q9C829
      UniProtKB/TrEMBL
      A0A178WDE1
      Conserved Domains (2) summary
      cd13169
      Location:299 → 415
      RanBD_NUP50_plant; Ran-binding protein 2, repeat 1
      pfam08911
      Location:13 → 75
      NUP50; NUP50 (Nucleoporin 50 kDa)

    4. NM_001333543.1 → NP_001322286.1  NUP50 (Nucleoporin 50 kDa) protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L6Y2, Q9C829
      UniProtKB/TrEMBL
      A0A178WDE1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C829.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools