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    PnsB3 NDH-dependent cyclic electron flow 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820871, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PnsB3
    Official Full Name
    NDH-dependent cyclic electron flow 1
    Primary source
    TAIR:AT3G16250
    Locus tag
    AT3G16250
    See related
    Araport:AT3G16250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NDF4; NDH-dependent cyclic electron flow 1; Photosynthetic NDH subcomplex B 3
    Summary
    encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster.
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    Genomic context

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    See PnsB3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (5506931..5508414, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Putative eukaryotic LigT Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene delta tonoplast integral protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNAse Z4 Neighboring gene ENTH/VHS family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three novel subunits of Arabidopsis chloroplastic NAD(P)H dehydrogenase identified by bioinformatic and reverse genetic approaches. Takabayashi A, et al. Plant J, 2009 Jan. PMID 18785996
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NDF1, NDF2 and NDF4 are novel thylakoid proteins that are subunits of chloroplastic NAD(P)H dehydrogenase. [NDF4]
      Title: Three novel subunits of Arabidopsis chloroplastic NAD(P)H dehydrogenase identified by bioinformatic and reverse genetic approaches.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112496.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in P450-containing electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within photosynthetic electron transport in photosystem I IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NAD(P)H dehydrogenase complex (plastoquinone) IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of NAD(P)H dehydrogenase complex (plastoquinone) IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    NDH-dependent cyclic electron flow 1
    NP_188246.1
    • NDH-dependent cyclic electron flow 1 (NDF4); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT4G32590.1); Has 476 Blast hits to 476 proteins in 113 species: Archae - 4; Bacteria - 232; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5506931..5508414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112496.3 → NP_188246.1  NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188246.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LU21
      UniProtKB/TrEMBL
      A0A178VI23, A0A5S9XCU2, A0A654FD22
      Conserved Domains (1) summary
      COG0633
      Location:78 → 182
      Fdx; Ferredoxin [Energy production and conversion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LU21.1

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