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    NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820508, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
    Primary source
    TAIR:AT3G13180
    Locus tag
    AT3G13180
    See related
    Araport:AT3G13180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    17
    Sequence:
    Chromosome: 3; NC_003074.8 (4235950..4240116, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Spo11/DNA topoisomerase VI, subunit A protein Neighboring gene uncharacterized protein Neighboring gene WEB family protein (DUF827) Neighboring gene Cwf15 / Cwc15 cell cycle control family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_112158.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
    NP_187924.2
    • NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), NusB/RsmB/TIM44 (InterPro:IPR006027); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 10280 Blast hits to 10234 proteins in 2431 species: Archae - 377; Bacteria - 6832; Metazoa - 588; Fungi - 364; Plants - 311; Viruses - 0; Other Eukaryotes - 1808 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4235950..4240116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112158.5 → NP_187924.2  NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187924.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGE9, A0A5S9XBW2, Q8VYC4
      Conserved Domains (3) summary
      PRK14902
      Location:58 → 521
      PRK14902; 16S rRNA methyltransferase B; Provisional
      pfam01029
      Location:112 → 196
      NusB; NusB family
      cl17173
      Location:323 → 519
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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