U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LSM1B Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820624, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LSM1B
    Official Full Name
    Small nuclear ribonucleoprotein family protein
    Primary source
    TAIR:AT3G14080
    Locus tag
    AT3G14080
    See related
    Araport:AT3G14080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SM-like 1B
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LSM1B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (4667308..4669194)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Subtilase family protein Neighboring gene cation exchanger 9 Neighboring gene Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 Neighboring gene exocyst subunit exo70 family protein D3 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The LSM1-7 Complex Differentially Regulates Arabidopsis Tolerance to Abiotic Stress Conditions by Promoting Selective mRNA Decapping. Perea-Resa C, et al. Plant Cell, 2016 Feb. PMID 26764377, Free PMC Article
    2. LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development. Perea-Resa C, et al. Plant Cell, 2012 Dec. PMID 23221597, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001338100.1
    NM_001338101.1
    NM_112264.4
    NM_180249.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA metabolic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within hyperosmotic salinity response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within mRNA processing IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Small nuclear ribonucleoprotein family protein
    NP_566476.1
    • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 1121 Blast hits to 1119 proteins in 232 species: Archae - 63; Bacteria - 0; Metazoa - 413; Fungi - 327; Plants - 207; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
    NP_850580.1
    • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 1121 Blast hits to 1119 proteins in 232 species: Archae - 63; Bacteria - 0; Metazoa - 413; Fungi - 327; Plants - 207; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4667308..4669194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112264.4 → NP_566476.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566476.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFL8, Q9LJI0
      UniProtKB/TrEMBL
      A0A178VF08, A0A5S9XDE0
      Conserved Domains (1) summary
      cd01728
      Location:12 → 82
      LSm1; Like-Sm protein 1

    2. NM_180249.4 → NP_850580.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850580.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFL8, Q9LJI0
      UniProtKB/TrEMBL
      A0A178VF08, A0A5S9XDE0
      Conserved Domains (1) summary
      cd01728
      Location:12 → 82
      LSm1; Like-Sm protein 1

    3. NM_001338100.1 → NP_001326378.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP34

    4. NM_001338101.1 → NP_001326377.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDM0, A0A1I9LP33, A0A384KWF8
      Conserved Domains (1) summary
      cd01728
      Location:12 → 72
      LSm1; Like-Sm protein 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LFL8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.