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    Mitochondrial transcription termination factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821420, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Mitochondrial transcription termination factor family protein
    Primary source
    TAIR:AT3G18870
    Locus tag
    AT3G18870
    See related
    Araport:AT3G18870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (6508385..6509343, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene lysophosphatidyl acyltransferase 5 Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene ncRNA Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana mTERF10 and mTERF11, but Not mTERF12, Are Involved in the Response to Salt Stress. Xu D, et al. Front Plant Sci, 2017. PMID 28769941, Free PMC Article
    2. Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Babiychuk E, et al. Proc Natl Acad Sci U S A, 2011 Apr 19. PMID 21464319, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112773.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid nucleoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Mitochondrial transcription termination factor family protein
    NP_188517.1
    • Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 839 Blast hits to 671 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 730; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6508385..6509343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112773.3 → NP_188517.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188517.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKZ3, A0A7G2ELP7, Q9LHN2
      Conserved Domains (1) summary
      cl19765
      Location:69 → 268
      mTERF; mTERF
    Nucleotide Protein
    Heading Accession and Version

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