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    DFO uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837217, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DFO
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT1G07060
    Locus tag
    AT1G07060
    See related
    Araport:AT1G07060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDFO; DSB formation; F10K1.23; F10K1_23
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    Genomic context

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    See DFO in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (2166348..2168397, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CCT motif family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein L35Ae family protein Neighboring gene Thioredoxin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis thaliana DSB formation (AtDFO) gene is required for meiotic double-strand break formation. Zhang C, et al. Plant J, 2012 Oct. PMID 22694475
    2. MTOPVIB interacts with AtPRD1 and plays important roles in formation of meiotic DNA double-strand breaks in Arabidopsis. Tang Y, et al. Sci Rep, 2017 Aug 30. PMID 28855712, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in meiotic DNA double-strand break formation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within meiotic DNA double-strand break formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within meiotic cell cycle IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_172187.1
    • unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2166348..2168397 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331678.1 → NP_001322524.1  uncharacterized protein AT1G07060 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMU9

    2. NM_001331679.1 → NP_001322523.1  uncharacterized protein AT1G07060 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMU9, A0A1P8AU93

    3. NM_100580.2 → NP_172187.1  uncharacterized protein AT1G07060 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172187.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RX33, Q9LMJ9

    4. NM_001331680.1 → NP_001322522.1  uncharacterized protein AT1G07060 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU91
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RX33.1

    Gene LinkOut

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