U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ATP-dependent caseinolytic (Clp) protease/crotonase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826967, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    Primary source
    TAIR:AT4G13360
    Locus tag
    AT4G13360
    See related
    Araport:AT4G13360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9E8.100; T9E8_100
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (7775020..7777895)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Serinc-domain containing serine and sphingolipid biosynthesis protein Neighboring gene NSP (nuclear shuttle protein)-interacting GTPase Neighboring gene serine/arginine repetitive matrix protein, putative (DUF936) Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene Proline-rich extensin-like family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_117410.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3-hydroxyisobutyryl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    NP_193072.2
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT3G24360.1); Has 20226 Blast hits to 20218 proteins in 1812 species: Archae - 355; Bacteria - 13945; Metazoa - 843; Fungi - 613; Plants - 486; Viruses - 0; Other Eukaryotes - 3984 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7775020..7777895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117410.7 → NP_193072.2  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193072.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T0K7
      UniProtKB/TrEMBL
      A0A178UTL3, A0A5S9XSJ7
      Conserved Domains (1) summary
      pfam16113
      Location:60 → 408
      ECH_2; Enoyl-CoA hydratase/isomerase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T0K7.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.