phosphoinositide binding protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: phosphoinositide binding protein
Primary source: TAIR:AT4G32780
Locus tag: AT4G32780
See related: Araport:AT4G32780
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F4D11.20; F4D11_20
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 8

Sequence:: Chromosome: 4; NC_003075.7 (15808852..15811926)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001342173.1

Supported by ESTs:

NM_119431.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables phosphatidylinositol binding	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within signal transduction	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: phosphoinositide binding protein

NP_001320118.1

phosphoinositide binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT5G43870.1); Has 405 Blast hits to 233 proteins in 34 species: Archae - 2; Bacteria - 17; Metazoa - 10; Fungi - 2; Plants - 172; Viruses - 6; Other Eukaryotes - 196 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

15808852..15811926

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001342174.1 → NP_001329726.1 phosphoinositide binding protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V1A6, A0A1P8B8L5, A0A654FUY2

Conserved Domains (2) summary

pfam05703
Location:54 → 284

Auxin_canalis; Auxin canalisation

pfam08458
Location:311 → 414

PH_2; Plant pleckstrin homology-like region
NM_001342173.1 → NP_001320118.1 phosphoinositide binding protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V339, F4JV54
NM_119431.5 → NP_195004.2 phosphoinositide binding protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195004.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B8L2, O65523

Conserved Domains (1) summary

pfam05703
Location:54 → 262

Auxin_canalis; Auxin canalization