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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829968, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT4G38120
    Locus tag
    AT4G38120
    See related
    Araport:AT4G38120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D10.240; F20D10_240
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    26
    Sequence:
    Chromosome: 4; NC_003075.7 (17888501..17896255, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S5 domain protein Neighboring gene exportin-4 protein Neighboring gene CURVATURE THYLAKOID 1D-like protein Neighboring gene histone deacetylase 1 Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125665.1
    NM_001342481.1
    NM_119973.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_001119137.1
    • ARM repeat superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_195525.2
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17888501..17896255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342480.1 → NP_001328438.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4P1, A0A5S9Y0I7, A0A654FWJ7
      Conserved Domains (2) summary
      sd00044
      Location:787 → 824
      HEAT; HEAT repeat [structural motif]
      pfam13251
      Location:392 → 577
      DUF4042; Domain of unknown function (DUF4042)

    2. NM_119973.4 → NP_195525.2  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195525.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y0I7, F4JSY2
      Conserved Domains (4) summary
      cd00020
      Location:750 → 859
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam13251
      Location:389 → 574
      DUF4042; Domain of unknown function (DUF4042)
      pfam13646
      Location:794 → 907
      HEAT_2; HEAT repeats
      sd00044
      Location:784 → 821
      HEAT; HEAT repeat [structural motif]

    3. NM_001342481.1 → NP_001328439.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4N5, A0A5S9Y0I7

    4. NM_001125665.1 → NP_001119137.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119137.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q494P8, Q9SZL2
      Conserved Domains (1) summary
      pfam13251
      Location:392 → 446
      DUF4042; Domain of unknown function (DUF4042)
    Nucleotide Protein
    Heading Accession and Version

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