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    ribosomal protein S5 domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829965, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ribosomal protein S5 domain protein
    Primary source
    TAIR:AT4G38090
    Locus tag
    AT4G38090
    See related
    Araport:AT4G38090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D10.210; F20D10_210
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (17883679..17884821, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene basic helix loop helix (bHLH) DNA-binding superfamily protein Neighboring gene transcription factor bHLH131-like protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene exportin-4 protein Neighboring gene CURVATURE THYLAKOID 1D-like protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001342477.1
    NM_119970.3
    NM_179184.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein S5 domain protein
    NP_001320157.1
    • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_568034.1
    • Ribosomal protein S5 domain 2-like superfamily protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849515.1
    • Ribosomal protein S5 domain 2-like superfamily protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 3816 Blast hits to 3816 proteins in 1926 species: Archae - 79; Bacteria - 3485; Metazoa - 43; Fungi - 32; Plants - 52; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17883679..17884821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342477.1 → NP_001320157.1  ribosomal protein S5 domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H5Q9

    2. NM_119970.3 → NP_568034.1  ribosomal protein S5 domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568034.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZY7, B9DG41, Q8LDU2
      Conserved Domains (1) summary
      pfam01205
      Location:52 → 151
      UPF0029; Uncharacterized protein family UPF0029

    3. NM_179184.2 → NP_849515.1  ribosomal protein S5 domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849515.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q84WL1
      Conserved Domains (2) summary
      COG1739
      Location:37 → 181
      YIH1; Putative translation regulator, IMPACT (imprinted ancient) protein family [General function prediction only]
      pfam01205
      Location:52 → 153
      UPF0029; Uncharacterized protein family UPF0029
    Nucleotide Protein
    Heading Accession and Version

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