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    SK6 SKP1-like 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824472, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SK6
    Official Full Name
    SKP1-like 6
    Primary source
    TAIR:AT3G53060
    Locus tag
    AT3G53060
    See related
    Araport:AT3G53060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASK6; SKP1-like 6
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    Genomic context

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    See SK6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (19670166..19670423)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein, putative / LEA protein Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein Neighboring gene ncRNA Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
    2. The Arabidopsis F-box protein SKP1-INTERACTING PARTNER 31 modulates seed maturation and seed vigor by targeting JASMONATE ZIM DOMAIN proteins independently of jasmonic acid-isoleucine. Varshney V, et al. Plant Cell, 2023 Sep 27. PMID 37462265, Free PMC Article
    3. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115166.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1-like 6
    NP_566978.1
    • SKP1-like 6 (SK6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 5 (TAIR:AT3G60020.1); Has 1174 Blast hits to 1172 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 171; Plants - 431; Viruses - 9; Other Eukaryotes - 115 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19670166..19670423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115166.1 → NP_566978.1  SKP1-like 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566978.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MF26, Q1PEF6, Q9LF86
      Conserved Domains (1) summary
      smart00512
      Location:2 → 73
      Skp1; Found in Skp1 protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PEF6.1

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