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    NF-YB10 nuclear factor Y, subunit B10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824502, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NF-YB10
    Official Full Name
    nuclear factor Y, subunit B10
    Primary source
    TAIR:AT3G53340
    Locus tag
    AT3G53340
    See related
    Araport:AT3G53340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; nuclear factor Y; subunit B10; subunit B10''
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    Genomic context

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    See NF-YB10 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (19774318..19776289, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit-like protein Neighboring gene plastocyanin-like domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ROP interactive partner 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. Wenkel S, et al. Plant Cell, 2006 Nov. PMID 17138697, Free PMC Article
    2. Interactions and CCAAT-binding of Arabidopsis thaliana NF-Y subunits. Calvenzani V, et al. PLoS One, 2012. PMID 22912760, Free PMC Article
    3. Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y. Hackenberg D, et al. Mol Plant, 2012 Jul. PMID 22199235
    4. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
    5. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115194.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within glucosinolate metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor Y, subunit B10
    NP_190902.2
    • ''nuclear factor Y, subunit B10'' (NF-YB10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B8 (TAIR:AT2G37060.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19774318..19776289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339609.1 → NP_001327560.1  nuclear factor Y, subunit B10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSP5

    2. NM_001339608.1 → NP_001327561.1  nuclear factor Y, subunit B10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSP5

    3. NM_001339610.1 → NP_001327563.1  nuclear factor Y, subunit B10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSP8

    4. NM_001339611.1 → NP_001327562.1  nuclear factor Y, subunit B10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67XJ2, Q9LFI3
      UniProtKB/TrEMBL
      A0A178VNV1, A0A5S9XKJ4
      Conserved Domains (1) summary
      pfam00808
      Location:32 → 97
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

    5. NM_115194.3 → NP_190902.2  nuclear factor Y, subunit B10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190902.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67XJ2, Q9LFI3
      UniProtKB/TrEMBL
      A0A178VNV1, A0A5S9XKJ4
      Conserved Domains (1) summary
      pfam00808
      Location:32 → 97
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67XJ2.1

    Gene LinkOut

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