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    glycine/proline-rich protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830650, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycine/proline-rich protein
    Primary source
    TAIR:AT5G07570
    Locus tag
    AT5G07570
    See related
    Araport:AT5G07570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2I1.280; T2I1_280
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (2391581..2396329)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycine-rich protein 19 Neighboring gene glycine-rich protein 20 Neighboring gene Oleosin family protein Neighboring gene uncharacterized protein Neighboring gene ethylene-responsive transcription factor Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycine/proline-rich protein
    NP_196374.1
    • glycine/proline-rich protein; LOCATED IN: endomembrane system; EXPRESSED IN: synergid; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2391581..2396329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342950.1 → NP_001331191.1  glycine/proline-rich protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD78

    2. NM_001342949.1 → NP_001331192.1  glycine/proline-rich protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD46

    3. NM_120839.1 → NP_196374.1  glycine/proline-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196374.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZA4, Q9LY06
      Conserved Domains (4) summary
      PHA03377
      Location:1255 → 1356
      PHA03377; EBNA-3C; Provisional
      PHA03247
      Location:568 → 1079
      PHA03247; large tegument protein UL36; Provisional
      PHA03307
      Location:1111 → 1422
      PHA03307; transcriptional regulator ICP4; Provisional
      cl21487
      Location:178 → 342
      OM_channels; Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20) ...
    Nucleotide Protein
    Heading Accession and Version

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