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    ER membrane protein complex subunit-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830945, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ER membrane protein complex subunit-like protein
    Primary source
    TAIR:AT5G10780
    Locus tag
    AT5G10780
    See related
    Araport:AT5G10780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30N20.50; T30N20_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (3408209..3410076)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ubiquitin-specific protease 22 Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene enhancer of rudimentary protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085099.1
    NM_121116.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ER membrane protein complex subunit-like protein
    NP_001078568.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 395 Blast hits to 395 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants - 51; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
    NP_568238.1
    • CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3408209..3410076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121116.4 → NP_568238.1  ER membrane protein complex subunit-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568238.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBU9, A0A654FZZ5, Q93VE6
      Conserved Domains (1) summary
      pfam06417
      Location:51 → 166
      DUF1077; Protein of unknown function (DUF1077)

    2. NM_001085099.1 → NP_001078568.1  ER membrane protein complex subunit-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078568.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBU9, A8MQD8
      Conserved Domains (1) summary
      pfam06417
      Location:51 → 166
      DUF1077; Protein of unknown function (DUF1077)
    Nucleotide Protein
    Heading Accession and Version

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