U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    cwINV6 6-&1-fructan exohydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831065, updated on 18-Sep-2024

    Summary

    Official Symbol
    cwINV6
    Official Full Name
    6-&1-fructan exohydrolase
    Primary source
    TAIR:AT5G11920
    Locus tag
    AT5G11920
    See related
    Araport:AT5G11920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    6-&1-fructan exohydrolase; AtcwINV6; F14F18.90; F14F18_90
    Summary
    Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See cwINV6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (3839316..3842409)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene harpin-induced protein Neighboring gene Translation initiation factor SUI1 family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Thioredoxin superfamily protein Neighboring gene Subtilase family protein

    General gene information

    NM_001085105.1
    NM_121230.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fructan beta-fructosidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
     
    enables inulinase activity IDA
    Inferred from Direct Assay
    more info
     
    enables levanase activity IDA
    Inferred from Direct Assay
    more info
     
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    6-&1-fructan exohydrolase
    NP_001078574.1
    • 6-&1-fructan exohydrolase (cwINV6); FUNCTIONS IN: inulinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, levanase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycoside hydrolase, family 32, active site (InterPro:IPR018053); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase 5 (TAIR:AT1G55120.1); Has 3953 Blast hits to 3930 proteins in 1186 species: Archae - 18; Bacteria - 2576; Metazoa - 95; Fungi - 238; Plants - 830; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
    NP_568254.1
    • 6-&1-fructan exohydrolase (cwINV6); FUNCTIONS IN: inulinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, levanase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase 5 (TAIR:AT1G55120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3839316..3842409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343222.1NP_001330604.1  6-&1-fructan exohydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGU8, A0A1P8BBC3, A0A384KLF0, A0A5S9Y5M5
      Conserved Domains (1) summary
      smart00640
      Location:1464
      Glyco_32; Glycosyl hydrolases family 32
    2. NM_121230.3NP_568254.1  6-&1-fructan exohydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568254.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQQ0, Q8W4S6, Q9LYI1
      UniProtKB/TrEMBL
      A0A5S9Y5M5, A0A654G0C5
      Conserved Domains (1) summary
      smart00640
      Location:21499
      Glyco_32; Glycosyl hydrolases family 32
    3. NM_001085105.1NP_001078574.1  6-&1-fructan exohydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078574.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JZE3
      Conserved Domains (2) summary
      smart00640
      Location:21385
      Glyco_32; Glycosyl hydrolases family 32
      pfam00251
      Location:21341
      Glyco_hydro_32N; Glycosyl hydrolases family 32 N-terminal domain