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    Surfeit locus protein 2 (SURF2) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831295, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Surfeit locus protein 2 (SURF2)
    Primary source
    TAIR:AT5G14440
    Locus tag
    AT5G14440
    See related
    Araport:AT5G14440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O22.230; F18O22_230
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (4655903..4657907, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene RING domain ligase2 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene Pseudouridine synthase family protein Neighboring gene GHMP kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036805.2
    NM_121448.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Surfeit locus protein 2 (SURF2)
    NP_001031882.1
    • Surfeit locus protein 2 (SURF2); CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 2 (SURF2) (TAIR:AT5G40570.1); Has 6239 Blast hits to 4458 proteins in 355 species: Archae - 8; Bacteria - 208; Metazoa - 2178; Fungi - 784; Plants - 299; Viruses - 89; Other Eukaryotes - 2673 (source: NCBI BLink).
    NP_196948.2
    • Surfeit locus protein 2 (SURF2); CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 2 (SURF2) (TAIR:AT5G40570.1); Has 6258 Blast hits to 4510 proteins in 365 species: Archae - 8; Bacteria - 221; Metazoa - 2197; Fungi - 751; Plants - 330; Viruses - 76; Other Eukaryotes - 2675 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4655903..4657907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036805.2 → NP_001031882.1  Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031882.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8N2, A0A654G0Y2, Q9LY85
      Conserved Domains (1) summary
      pfam05477
      Location:14 → 267
      SURF2; Surfeit locus protein 2 (SURF2)

    2. NM_121448.4 → NP_196948.2  Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196948.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9Q1, A0A654G0Y2, Q6NPE4
      Conserved Domains (1) summary
      pfam05477
      Location:14 → 247
      SURF2; Surfeit locus protein 2 (SURF2)
    Nucleotide Protein
    Heading Accession and Version

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