U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CHR17 chromatin remodeling factor17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831980, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CHR17
    Official Full Name
    chromatin remodeling factor17
    Primary source
    TAIR:AT5G18620
    Locus tag
    AT5G18620
    See related
    Araport:AT5G18620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    chromatin remodeling factor17; T1A4.2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CHR17 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    25
    Sequence:
    Chromosome: 5; NC_003076.8 (6195689..6202168, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tonneau 2 (TON2) Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Thioredoxin superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The ISWI remodeler in plants: protein complexes, biochemical functions, and developmental roles. Li D, et al. Chromosoma, 2017 Jun. PMID 28213686
    2. ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis. Li G, et al. Plant J, 2014 May. PMID 24606212
    3. Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling. Brzezinka K, et al. Elife, 2016 Sep 28. PMID 27680998, Free PMC Article
    4. Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis. Li G, et al. Plant J, 2012 Oct. PMID 22694359
    5. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Tan LM, et al. Plant Cell, 2020 Jul. PMID 32358072, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_121867.4
    NM_180516.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleosome array spacer activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of cellular response to heat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ISWI-type complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    chromatin remodeling factor17
    NP_568365.2
    • chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25189 Blast hits to 20364 proteins in 2195 species: Archae - 142; Bacteria - 5972; Metazoa - 6064; Fungi - 4945; Plants - 1903; Viruses - 481; Other Eukaryotes - 5682 (source: NCBI BLink).
    NP_850847.1
    • chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25193 Blast hits to 20371 proteins in 2196 species: Archae - 142; Bacteria - 5974; Metazoa - 6066; Fungi - 4943; Plants - 1903; Viruses - 481; Other Eukaryotes - 5684 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6195689..6202168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121867.4 → NP_568365.2  chromatin remodeling factor17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568365.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JY24, Q94C61
      UniProtKB/TrEMBL
      A0A178UKL4, A0A5S9Y5A8
      Conserved Domains (6) summary
      PLN03142
      Location:19 → 1056
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd00046
      Location:214 → 353
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00167
      Location:849 → 890
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00271
      Location:510 → 609
      Helicase_C; Helicase conserved C-terminal domain
      pfam09110
      Location:759 → 835
      HAND; HAND
      pfam09111
      Location:903 → 1012
      SLIDE; SLIDE

    2. NM_180516.2 → NP_850847.1  chromatin remodeling factor17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850847.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y5A8, A0A7G2FBS6, F4JY25
      Conserved Domains (1) summary
      PLN03142
      Location:19 → 1056
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JY24.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools