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    Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831977, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Galactose oxidase/kelch repeat superfamily protein
    Primary source
    TAIR:AT5G18590
    Locus tag
    AT5G18590
    See related
    Araport:AT5G18590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28N17.70; T28N17_70
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (6178354..6182761, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GTP1/OBG family protein Neighboring gene tonneau 2 (TON2) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Thioredoxin superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene chromatin remodeling factor17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121864.4
    NM_180515.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Galactose oxidase/kelch repeat superfamily protein
    NP_197360.2
    • Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).
    NP_850846.1
    • Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6178354..6182761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121864.4 → NP_197360.2  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197360.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G2E5, B9DFP5, Q0WWX4, Q8L869
      Conserved Domains (3) summary
      PLN02193
      Location:65 → 308
      PLN02193; nitrile-specifier protein
      PLN02939
      Location:428 → 698
      PLN02939; transferase, transferring glycosyl groups
      sd00038
      Location:79 → 133
      Kelch; KELCH repeat [structural motif]

    2. NM_180515.2 → NP_850846.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850846.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G2E5, B9DFP5, Q0WWX4, Q8L869
      Conserved Domains (3) summary
      PLN02193
      Location:65 → 308
      PLN02193; nitrile-specifier protein
      PLN02939
      Location:428 → 698
      PLN02939; transferase, transferring glycosyl groups
      sd00038
      Location:79 → 133
      Kelch; KELCH repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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