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    Cysteine/Histidine-rich C1 domain family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833740, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cysteine/Histidine-rich C1 domain family protein
    Primary source
    TAIR:AT5G37620
    Locus tag
    AT5G37620
    See related
    Araport:AT5G37620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K12B20.70; K12B20_70
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (14942396..14944354, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Eukaryotic porin family protein Neighboring gene ncRNA Neighboring gene ARM repeat superfamily protein Neighboring gene ubiquitin 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Cysteine/Histidine-rich C1 domain family protein
    NP_198578.1
    • Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G04680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      14942396..14944354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123121.1 → NP_198578.1  Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198578.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G5T6, Q9FHQ8
      Conserved Domains (2) summary
      pfam03107
      Location:559 → 589
      C1_2; C1 domain
      pfam07649
      Location:403 → 430
      C1_3; C1-like domain
    Nucleotide Protein
    Heading Accession and Version

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