GDPD2 PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: GDPD2
Official Full Name: PLC-like phosphodiesterases superfamily protein
Primary source: TAIR:AT5G41080
Locus tag: AT5G41080
See related: Araport:AT5G41080
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtGDPD2; glycerophosphodiester phosphodiesterase 2; MEE6.15; MEE6_15
Summary: Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.
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Genomic context

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See GDPD2 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 7

Sequence:: Chromosome: 5; NC_003076.8 (16441655..16444023)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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General gene information

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Homology

Orthologs from OrthoDB

NM_123473.4

Supported by ESTs:

NM_203136.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables glycerophosphodiester phosphodiesterase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cellular response to hypoxia	HEP more info	PubMed
involved_in lipid metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in cytoplasm	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: PLC-like phosphodiesterases superfamily protein

NP_198924.1

PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NP_974865.1

PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

16441655..16444023

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_123473.4 → NP_198924.1 PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_198924.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9FLM1

UniProtKB/TrEMBL

A0A5S9YC73, A0A654G6T9, B9DHC2

Conserved Domains (1) summary

cd08605
Location:39 → 319

GDPD_GDE5_like_1_plant; Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5
NM_203136.1 → NP_974865.1 PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974865.1

Status: REVIEWED

UniProtKB/TrEMBL

B9DHC2, F4JWX3

Conserved Domains (2) summary

cd08605
Location:23 → 303

GDPD_GDE5_like_1_plant; Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5

pfam03009
Location:27 → 305

GDPD; Glycerophosphoryl diester phosphodiesterase family