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    SAC51 transcription factor SAC51 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836555, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SAC51
    Official Full Name
    transcription factor SAC51
    Primary source
    TAIR:AT5G64340
    Locus tag
    AT5G64340
    See related
    Araport:AT5G64340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSJ1.18; MSJ1_18; SUPPRESSOR OF ACAULIS 51
    Summary
    Encodes a bHLH(basic helix-loop-helix)-type transcription factor SAC51 [suppressor of acaulis 51]. Upregulation of SAC51 reverses the dwarf phenotype caused by a loss-of-function mutation in ACL5 (Arabidopsis thaliana ACAULIS 5) gene, suggesting that activation of SAC51 may lead to the expression of a subset of genes required for stem elongation.
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    Genomic context

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    See SAC51 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (25730335..25733313, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene arabinogalactan protein 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene FK506-binding protein 12 Neighboring gene Chaperone DnaJ-domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Cai Q, et al. Plant Cell Physiol, 2016 Aug. PMID 27388339
    2. The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene. Imai A, et al. Development, 2006 Sep. PMID 16936072
    3. The Arabidopsis basic/helix-loop-helix transcription factor family. Toledo-Ortiz G, et al. Plant Cell, 2003 Aug. PMID 12897250, Free PMC Article
    4. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Heim MA, et al. Mol Biol Evol, 2003 May. PMID 12679534
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Miscellaneous features

    • Loc: c25732229-25732191 AT5G64340.uORF1-1
    • Loc: c25732450-25732328 AT5G64340.uORF1-2
    • Loc: c25732593-25732543 AT5G64340.uORF2
    • Loc: c25732753-25732691 AT5G64340.uORF3
    NM_125830.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor SAC51
    NP_201239.1
    • SUPPRESSOR OF ACAULIS 51 (SAC51); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G09460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25730335..25733313 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125830.2 → NP_201239.1  transcription factor SAC51 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201239.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FMF4
      UniProtKB/TrEMBL
      A0A178UNU7, A0A5S9YHK9, A0A654GDY1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FMF4.1

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