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    Histone H3 K4-specific methyltransferase SET7/9 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827416, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Histone H3 K4-specific methyltransferase SET7/9 family protein
    Primary source
    TAIR:AT4G17080
    Locus tag
    AT4G17080
    See related
    Araport:AT4G17080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4570W; FCAALL.347
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (9601348..9604265)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ureidoglycine aminohydrolase Neighboring gene FRIGIDA interacting protein 2 Neighboring gene peptidyl-prolyl cis-trans isomerase Neighboring gene Putative membrane lipoprotein Neighboring gene chloroplast beta-amylase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Golgi-localized MORN1 promotes lipid droplet abundance and enhances tolerance to multiple stresses in Arabidopsis. Li Z, et al. J Integr Plant Biol, 2023 Aug. PMID 37097077
    2. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    3. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117812.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in lipid droplet IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Histone H3 K4-specific methyltransferase SET7/9 family protein
    NP_193441.5
    • Histone H3 K4-specific methyltransferase SET7/9 family protein; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: Histone H3 K4-specific methyltransferase SET7/9 family protein (TAIR:AT2G35170.1); Has 26543 Blast hits to 6479 proteins in 565 species: Archae - 0; Bacteria - 4119; Metazoa - 3892; Fungi - 164; Plants - 2567; Viruses - 0; Other Eukaryotes - 15801 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9601348..9604265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117812.6 → NP_193441.5  Histone H3 K4-specific methyltransferase SET7/9 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193441.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYG3, O23552, Q8L7W4
      Conserved Domains (2) summary
      PLN03185
      Location:256 → 415
      PLN03185; phosphatidylinositol phosphate kinase; Provisional
      cd16914
      Location:156 → 219
      EcfT; T component of ECF-type transporters
    Nucleotide Protein
    Heading Accession and Version

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