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    AHG11 Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819097, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AHG11
    Official Full Name
    Pentatricopeptide repeat (PPR-like) superfamily protein
    Primary source
    TAIR:AT2G44880
    Locus tag
    AT2G44880
    See related
    Araport:AT2G44880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ABA hypersensitive germination 11; T13E15.11
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    Genomic context

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    See AHG11 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (18505101..18508298)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L24e family protein Neighboring gene ncRNA Neighboring gene replicase polyprotein 1ab protein Neighboring gene ncRNA Neighboring gene cytochrome P450, family 704, subfamily A, polypeptide 1 Neighboring gene ARABIDILLO-1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation of Arabidopsis ahg11, a weak ABA hypersensitive mutant defective in nad4 RNA editing. Murayama M, et al. J Exp Bot, 2012 Sep. PMID 22821940, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR-like) superfamily protein
    NP_182015.1
    • Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G29230.1); Has 36784 Blast hits to 13843 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 10; Fungi - 56; Plants - 36313; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18505101..18508298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337101.1 → NP_001324546.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0G8, A0A5S9X722

    2. NM_001337102.1 → NP_001324542.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0J3, A0A5S9X722

    3. NM_001337103.1 → NP_001324545.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0J3, A0A5S9X722

    4. NM_001337104.1 → NP_001324544.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0F9, A0A5S9X722

    5. NM_001337105.1 → NP_001324543.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0G9, A0A5S9X722

    6. NM_130052.2 → NP_182015.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182015.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22163, Q1PEU4
      UniProtKB/TrEMBL
      A0A5S9X722
      Conserved Domains (5) summary
      sd00004
      Location:146 → 173
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:239 → 265
      PPR; PPR repeat
      pfam12854
      Location:206 → 234
      PPR_1; PPR repeat
      pfam13041
      Location:174 → 219
      PPR_2; PPR repeat family
      pfam14432
      Location:511 → 553
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PEU4.2

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