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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816274, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT2G17670
    Locus tag
    AT2G17670
    See related
    Araport:AT2G17670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17A5.11; T17A5_11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (7674319..7676276)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Trimeric LpxA-like enzymes superfamily protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene RPM1-interacting protein 4 (RIN4) family protein Neighboring gene DUF241 domain protein, putative (DUF241) Neighboring gene outer envelope protein Neighboring gene ascorbic acid mannose pathway regulator, putative (DUF295)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127321.3
    NM_201752.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_565422.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 45396 Blast hits to 13729 proteins in 280 species: Archae - 5; Bacteria - 33; Metazoa - 451; Fungi - 602; Plants - 42971; Viruses - 0; Other Eukaryotes - 1334 (source: NCBI BLink).
    NP_973481.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7674319..7676276
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127321.3 → NP_565422.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565422.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84J71, Q8LED8
      UniProtKB/TrEMBL
      A0A654EV80
      Conserved Domains (2) summary
      PLN03218
      Location:149 → 431
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:302 → 329
      PPR; PPR repeat [structural motif]

    2. NM_201752.1 → NP_973481.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973481.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4INL2
      Conserved Domains (5) summary
      TIGR00756
      Location:266 → 299
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:267 → 294
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:294 → 327
      PPR_1; PPR repeat
      pfam13041
      Location:298 → 347
      PPR_2; PPR repeat family
      cl03252
      Location:330 → 349
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84J71.1

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