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    CID3 CTC-interacting domain 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841857, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CID3
    Official Full Name
    CTC-interacting domain 3
    Primary source
    TAIR:AT1G54170
    Locus tag
    AT1G54170
    See related
    Araport:AT1G54170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 3; F15I1.27; F15I1_27
    Summary
    ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins.
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    Genomic context

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    See CID3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (20221029..20226055, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene E3 Ubiquitin ligase family protein Neighboring gene ncRNA Neighboring gene nuclear factor Y, subunit A5 Neighboring gene ncRNA Neighboring gene BREVIS RADIX-like 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana. López-Juárez ZM, et al. Int J Mol Sci, 2021 Mar 17. PMID 33802796, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana.
      Title: The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104295.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 3
    NP_175819.1
    • CTC-interacting domain 3 (CID3); CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 4 (TAIR:AT3G14010.3); Has 939 Blast hits to 759 proteins in 220 species: Archae - 0; Bacteria - 26; Metazoa - 423; Fungi - 216; Plants - 125; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20221029..20226055 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104295.4 → NP_175819.1  CTC-interacting domain 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175819.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L793, Q9SYH5
      UniProtKB/TrEMBL
      A0A178WF06, A0A5S9WPU7
      Conserved Domains (4) summary
      smart00818
      Location:486 → 580
      Amelogenin; Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth
      COG5180
      Location:152 → 283
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:205 → 269
      LsmAD; LsmAD domain
      pfam14438
      Location:52 → 129
      SM-ATX; Ataxin 2 SM domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L793.1

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