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    DNA mismatch repair Msh6-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841860, updated on 18-Sep-2024

    Summary

    Official Full Name
    DNA mismatch repair Msh6-like protein
    Primary source
    TAIR:AT1G54200
    Locus tag
    AT1G54200
    See related
    Araport:AT1G54200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D21.2; F20D21_2
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (20235465..20237358)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene BREVIS RADIX-like 3 Neighboring gene Ubiquitin-like superfamily protein Neighboring gene proline-rich family protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_104298.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in auxin transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of auxin mediated signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    DNA mismatch repair Msh6-like protein
    NP_175822.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20235465..20237358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104298.4NP_175822.1  DNA mismatch repair Msh6-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175822.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SLL2
      UniProtKB/TrEMBL
      A0A178WF04, A0A5S9WLT9