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    NF-YC2 nuclear factor Y, subunit C2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842070, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NF-YC2
    Official Full Name
    nuclear factor Y, subunit C2
    Primary source
    TAIR:AT1G56170
    Locus tag
    AT1G56170
    See related
    Araport:AT1G56170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; ATHAP5B; F14G9.21; HAP5B; nuclear factor Y; subunit C2; subunit C2''
    Summary
    Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues
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    Genomic context

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    See NF-YC2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (21024482..21025902)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene ncRNA Neighboring gene myb domain protein 72 Neighboring gene ATP-dependent zinc metalloprotease Neighboring gene Phosphoglycerate kinase family protein Neighboring gene embryo defective 1303

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Homologous NF-YC2 subunit from Arabidopsis and tobacco is activated by photooxidative stress and induces flowering. Hackenberg D, et al. Int J Mol Sci, 2012. PMID 22489162, Free PMC Article
    2. Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. Edwards D, et al. Plant Physiol, 1998 Jul. PMID 9662544, Free PMC Article
    3. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Li S, et al. Plant Cell, 2014 Apr. PMID 24728648, Free PMC Article
    4. bZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis. Liu JX, et al. Plant Cell, 2010 Mar. PMID 20207753, Free PMC Article
    5. Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors. Yamamoto A, et al. Plant J, 2009 Jun. PMID 19207209

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. proposed that NF-YC2 functions in floral induction and is a candidate gene among the NF-Y family for the transcriptional activation upon oxidative stress
      Title: Homologous NF-YC2 subunit from Arabidopsis and tobacco is activated by photooxidative stress and induces flowering.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084257.2
    NM_104496.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor Y, subunit C2
    NP_001077726.1
    • ''nuclear factor Y, subunit C2'' (NF-YC2); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1485 Blast hits to 1485 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 338; Plants - 429; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    NP_176013.1
    • ''nuclear factor Y, subunit C2'' (NF-YC2); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1485 Blast hits to 1485 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 338; Plants - 429; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21024482..21025902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104496.3 → NP_176013.1  nuclear factor Y, subunit C2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176013.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23636, Q8LCG7, Q8VY66, Q9SGU4
      UniProtKB/TrEMBL
      A0A178WJL4, A0A5S9WQ73, A0A7G2E1I3
      Conserved Domains (1) summary
      COG5208
      Location:58 → 157
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    2. NM_001084257.2 → NP_001077726.1  nuclear factor Y, subunit C2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077726.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23636, Q8LCG7, Q8VY66, Q9SGU4
      UniProtKB/TrEMBL
      A0A178WJL4, A0A5S9WQ73, A0A7G2E1I3
      Conserved Domains (1) summary
      COG5208
      Location:58 → 157
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LCG7.2

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