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    mediator of RNA polymerase II transcription subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820074, updated on 18-Sep-2024

    Summary

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    Official Full Name
    mediator of RNA polymerase II transcription subunit
    Primary source
    TAIR:AT3G09180
    Locus tag
    AT3G09180
    See related
    Araport:AT3G09180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (2819040..2821441)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Concanavalin A-like lectin family protein Neighboring gene Ribosomal protein L10 family protein Neighboring gene plastid transcriptionally active 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Bäckström S, et al. Mol Cell, 2007 Jun 8. PMID 17560376
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337806.1
    NM_111753.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    part_of mediator complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit
    NP_566345.1
    • CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2819040..2821441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337805.1 → NP_001325464.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLB4

    2. NM_111753.4 → NP_566345.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566345.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFG5, Q8RWM3, Q9S7S1
      UniProtKB/TrEMBL
      A0A178VMG5, A0A5S9XAD2
      Conserved Domains (1) summary
      pfam11571
      Location:308 → 397
      Med27; Mediator complex subunit 27

    3. NM_001337806.1 → NP_001325465.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFG5, Q8RWM3, Q9S7S1
      UniProtKB/TrEMBL
      A0A178VMG5, A0A5S9XAD2
      Conserved Domains (1) summary
      pfam11571
      Location:308 → 397
      Med27; Mediator complex subunit 27
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWM3.1

    Gene LinkOut

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