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    RCI2B Low temperature and salt responsive protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819758, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RCI2B
    Official Full Name
    Low temperature and salt responsive protein family
    Primary source
    TAIR:AT3G05890
    Locus tag
    AT3G05890
    See related
    Araport:AT3G05890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2O10.15; F2O10_15; RARE-COLD-INDUCIBLE 2B
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    Genomic context

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    See RCI2B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (1757440..1758807, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex/cyclosome 11 Neighboring gene ncRNA Neighboring gene Low temperature and salt responsive protein family Neighboring gene ncRNA Neighboring gene neurofilament protein-like protein Neighboring gene Pectinacetylesterase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two homologous low-temperature-inducible genes from Arabidopsis encode highly hydrophobic proteins. Capel J, et al. Plant Physiol, 1997 Oct. PMID 9342870, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111463.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Low temperature and salt responsive protein family
    NP_187240.1
    • RARE-COLD-INDUCIBLE 2B (RCI2B); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT3G05880.1); Has 1391 Blast hits to 1391 proteins in 471 species: Archae - 0; Bacteria - 653; Metazoa - 37; Fungi - 280; Plants - 382; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1757440..1758807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111463.2 → NP_187240.1  Low temperature and salt responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187240.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M9K9, Q9ZNS6
      UniProtKB/TrEMBL
      A0A178VG66, A0A384LMJ2, Q67Z65
      Conserved Domains (1) summary
      pfam01679
      Location:5 → 52
      Pmp3; Proteolipid membrane potential modulator
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZNS6.1

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