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    calmodulin-binding transcription activator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820950, updated on 18-Sep-2024

    Summary

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    Official Full Name
    calmodulin-binding transcription activator
    Primary source
    TAIR:AT3G16940
    Locus tag
    AT3G16940
    See related
    Araport:AT3G16940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (5781418..5786310)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene lipoamide dehydrogenase 1 Neighboring gene plant self-incompatibility protein S1 family protein Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6: A Key Regulator of Na(+) Homeostasis during Germination. Shkolnik D, et al. Plant Physiol, 2019 Jun. PMID 30894419, Free PMC Article
    2. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. Yang T, et al. J Biol Chem, 2002 Nov 22. PMID 12218065
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338268.1
    NM_001338269.1
    NM_112570.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calmodulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    calmodulin-binding transcription activator
    NP_188319.2
    • calmodulin binding;transcription regulators; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Cell surface receptor IPT/TIG (InterPro:IPR002909), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin binding;transcription regulators (TAIR:AT4G16150.1); Has 5766 Blast hits to 3807 proteins in 309 species: Archae - 13; Bacteria - 199; Metazoa - 3382; Fungi - 247; Plants - 659; Viruses - 23; Other Eukaryotes - 1243 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5781418..5786310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112570.4 → NP_188319.2  calmodulin-binding transcription activator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188319.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VC09, A0A5S9XCU9, A0A654F7Y1
      Conserved Domains (5) summary
      smart01076
      Location:29 → 146
      CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues
      COG5022
      Location:691 → 836
      COG5022; Myosin heavy chain [General function prediction only]
      sd00045
      Location:514 → 540
      ANK; ANK repeat [structural motif]
      pfam01833
      Location:306 → 390
      TIG; IPT/TIG domain
      pfam12796
      Location:514 → 604
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_001338268.1 → NP_001327322.1  calmodulin-binding transcription activator [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRY6, A0A654F7Y1

    3. NM_001338269.1 → NP_001327323.1  calmodulin-binding transcription activator [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRY7, A0A654F7Y1
    Nucleotide Protein
    Heading Accession and Version

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