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    Transmembrane amino acid transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822536, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transmembrane amino acid transporter family protein
    Primary source
    TAIR:AT3G28960
    Locus tag
    AT3G28960
    See related
    Araport:AT3G28960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (10984050..10987203, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene RNA polymerase II, Rpb4, core protein Neighboring gene Cupredoxin superfamily protein Neighboring gene defective in cullin neddylation protein (DUF298) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338989.1
    NM_001338992.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Transmembrane amino acid transporter family protein
    NP_001319665.1
    • Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G15240.1); Has 4682 Blast hits to 4618 proteins in 292 species: Archae - 14; Bacteria - 67; Metazoa - 1733; Fungi - 899; Plants - 1284; Viruses - 8; Other Eukaryotes - 677 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10984050..10987203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338990.1 → NP_001327239.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1Q9, Q9MBG9
      UniProtKB/TrEMBL
      A0A5S9XGM5, A0A654FBS1
      Conserved Domains (1) summary
      cl00456
      Location:14 → 398
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. NM_113817.3 → NP_189538.2  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189538.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1Q9, Q9MBG9
      UniProtKB/TrEMBL
      A0A5S9XGM5, A0A654FBS1
      Conserved Domains (1) summary
      cl00456
      Location:14 → 398
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. NM_001338991.1 → NP_001327238.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRP9, A0A5S9XGM5, A0A654FBS1

    4. NM_001338989.1 → NP_001319665.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1Q9, Q9MBG9
      UniProtKB/TrEMBL
      A0A5S9XGM5, A0A654FBS1
      Conserved Domains (1) summary
      cl00456
      Location:14 → 398
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    5. NM_001338992.1 → NP_001327237.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1Q9, Q9MBG9
      UniProtKB/TrEMBL
      A0A5S9XGM5, A0A654FBS1
      Conserved Domains (1) summary
      cl00456
      Location:14 → 398
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J1Q9.1

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