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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820411, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT3G12320
    Locus tag
    AT3G12320
    See related
    Araport:AT3G12320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LNK3; night light-inducible and clock-regulated 3
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (3923515..3925502)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene protein arginine methyltransferase 3 Neighboring gene retinoblastoma-related 1 Neighboring gene Amino acid dehydrogenase family protein Neighboring gene cilia/flagella-associated protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene FKBP-type peptidyl-prolyl cis-trans isomerase Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted Recruitment of the Basal Transcriptional Machinery by LNK Clock Components Controls the Circadian Rhythms of Nascent RNAs in Arabidopsis. Ma Y, et al. Plant Cell, 2018 Apr. PMID 29618629, Free PMC Article
    2. Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Li G, et al. Nat Cell Biol, 2011 May. PMID 21499259
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337986.1
    NM_001337987.1
    NM_112067.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_566419.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3923515..3925502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112067.4 → NP_566419.1  uncharacterized protein AT3G12320 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566419.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHH5
      UniProtKB/TrEMBL
      A0A178VJK8, A0A5S9XBC5, A0A7G2END3

    2. NM_001337986.1 → NP_001326664.1  uncharacterized protein AT3G12320 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPZ3, A0A7G2END3

    3. NM_001337987.1 → NP_001326665.1  uncharacterized protein AT3G12320 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHH5
      UniProtKB/TrEMBL
      A0A178VJK8, A0A5S9XBC5, A0A7G2END3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LHH5.1

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