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    oxidoreductase, zinc-binding dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828243, updated on 18-Sep-2024

    Summary

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    Official Full Name
    oxidoreductase, zinc-binding dehydrogenase family protein
    Primary source
    TAIR:AT4G21580
    Locus tag
    AT4G21580
    See related
    Araport:AT4G21580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17L22.40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (11475709..11477837)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene VP1/ABI3-like 3 Neighboring gene vacuolar protein sorting-associated protein-like protein Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene endonuclease 4 Neighboring gene endonuclease 3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036614.1
    NM_001084950.1
    NM_118278.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    oxidoreductase, zinc-binding dehydrogenase family protein
    NP_001031691.1
    • oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Quinone oxidoreductase putative, PIG3 (InterPro:IPR014189), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G61510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078419.1
    • oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Quinone oxidoreductase putative, PIG3 (InterPro:IPR014189), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G61510.1); Has 44345 Blast hits to 44175 proteins in 2827 species: Archae - 637; Bacteria - 28883; Metazoa - 1910; Fungi - 3863; Plants - 1554; Viruses - 0; Other Eukaryotes - 7498 (source: NCBI BLink).
    NP_193889.1
    • oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Quinone oxidoreductase putative, PIG3 (InterPro:IPR014189), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G61510.1); Has 49097 Blast hits to 48922 proteins in 2912 species: Archae - 689; Bacteria - 31322; Metazoa - 2136; Fungi - 4353; Plants - 1878; Viruses - 0; Other Eukaryotes - 8719 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11475709..11477837
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118278.3 → NP_193889.1  oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193889.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V300, A0A5S9XUI9, O65423
      Conserved Domains (1) summary
      cd05276
      Location:1 → 323
      p53_inducible_oxidoreductase; PIG3 p53-inducible quinone oxidoreductase

    2. NM_001084950.1 → NP_001078419.1  oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078419.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XUI9, A8MRW5
      Conserved Domains (2) summary
      cd05276
      Location:1 → 317
      p53_inducible_oxidoreductase; PIG3 p53-inducible quinone oxidoreductase
      TIGR02824
      Location:1 → 319
      quinone_pig3; putative NAD(P)H quinone oxidoreductase, PIG3 family

    3. NM_001036614.1 → NP_001031691.1  oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031691.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XUI9, B9DGL1
      Conserved Domains (2) summary
      cd05276
      Location:2 → 290
      p53_inducible_oxidoreductase; PIG3 p53-inducible quinone oxidoreductase
      smart00829
      Location:15 → 290
      PKS_ER; Enoylreductase
    Nucleotide Protein
    Heading Accession and Version

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